format 58
"Tester" // src::SensorPlugins::Tester
  revision 1
  modified_by 2 "sallet"
  // class settings
  //class diagram settings
  draw_all_relations default hide_attributes default hide_operations default show_members_full_definition default show_members_visibility default show_members_stereotype default show_members_multiplicity default show_members_initialization default member_max_width 0 show_parameter_dir default show_parameter_name default package_name_in_tab default class_drawing_mode default drawing_language default show_context_mode default auto_label_position default show_infonote default shadow default show_stereotype_properties default
  //use case diagram settings
  package_name_in_tab default show_context default auto_label_position default draw_all_relations default class_drawing_mode default shadow default show_stereotype_properties default
  //sequence diagram settings
  show_full_operations_definition default write_horizontally default class_drawing_mode default drawing_language default draw_all_relations default shadow default show_stereotype_properties default
  //collaboration diagram settings
  show_full_operations_definition default show_hierarchical_rank default write_horizontally default drawing_language default package_name_in_tab default show_context default draw_all_relations default shadow default show_stereotype_properties default
  //object diagram settings
   write_horizontally default package_name_in_tab default show_context default auto_label_position default draw_all_relations default shadow default show_stereotype_properties default
  //component diagram settings
  package_name_in_tab default show_context default auto_label_position default draw_all_relations default shadow default
  draw_component_as_icon default show_component_req_prov default show_component_rea default show_stereotype_properties default
  //deployment diagram settings
  package_name_in_tab default show_context default write_horizontally default auto_label_position default draw_all_relations default shadow default
  draw_component_as_icon default show_component_req_prov default show_component_rea default show_stereotype_properties default
  //state diagram settings
  package_name_in_tab default show_context default auto_label_position default write_trans_label_horizontally default show_trans_definition default draw_all_relations default shadow default
  show_activities default region_horizontally default drawing_language default show_stereotype_properties default
  //activity diagram settings
  package_name_in_tab default show_context default show_opaque_action_definition default auto_label_position default write_flow_label_horizontally default draw_all_relations default shadow default
  show_infonote default drawing_language default show_stereotype_properties default
  
  classview 131714 "Tester"
    //class diagram settings
    draw_all_relations default hide_attributes default hide_operations default show_members_full_definition default show_members_visibility default show_members_stereotype default show_members_multiplicity default show_members_initialization default member_max_width 0 show_parameter_dir default show_parameter_name default package_name_in_tab default class_drawing_mode default drawing_language default show_context_mode default auto_label_position default show_infonote default shadow default show_stereotype_properties default
    //collaboration diagram settings
    show_full_operations_definition default show_hierarchical_rank default write_horizontally default drawing_language default package_name_in_tab default show_context default draw_all_relations default shadow default show_stereotype_properties default
    //object diagram settings
     write_horizontally default package_name_in_tab default show_context default auto_label_position default draw_all_relations default shadow default show_stereotype_properties default
    //sequence diagram settings
    show_full_operations_definition default write_horizontally default class_drawing_mode default drawing_language default draw_all_relations default shadow default show_stereotype_properties default
    //state diagram settings
    package_name_in_tab default show_context default auto_label_position default write_trans_label_horizontally default show_trans_definition default draw_all_relations default shadow default
    show_activities default region_horizontally default drawing_language default show_stereotype_properties default
    //class settings
    //activity diagram settings
    package_name_in_tab default show_context default show_opaque_action_definition default auto_label_position default write_flow_label_horizontally default draw_all_relations default shadow default
    show_infonote default drawing_language default show_stereotype_properties default
    class 140290 "EVALUATED_TYPE"
      visibility package stereotype "enum"
      cpp_decl "${comment}enum ${name} {
${items}
};
"
      java_decl ""
      php_decl ""
      python_2_2 python_decl ""
      idl_decl ""
      explicit_switch_type ""
      
      comment "************************************************************
 **                     SensorTester                        **
 ************************************************************"
      attribute 191362 "EVALUATED_START"
	public type class_ref 140290 // EVALUATED_TYPE
	cpp_decl "  ${name}${value},${comment}"
	java_decl ""
	php_decl ""
	python_decl ""
	idl_decl ""
      end

      attribute 191490 "EVALUATED_STOP"
	public type class_ref 140290 // EVALUATED_TYPE
	cpp_decl "  ${name}${value},${comment}"
	java_decl ""
	php_decl ""
	python_decl ""
	idl_decl ""
      end

      attribute 191618 "EVALUATED_SPLICE"
	public type class_ref 140290 // EVALUATED_TYPE
	cpp_decl "  ${name}${value},${comment}"
	java_decl ""
	php_decl ""
	python_decl ""
	idl_decl ""
      end
    end

    class 140418 "SensorTester"
      visibility package 
      cpp_decl "${comment}${template}class ${name}${inherit} {
${members}};
${inlines}
"
      java_decl ""
      php_decl ""
      python_2_2 python_decl ""
      idl_decl ""
      explicit_switch_type ""
      
      classrelation 140418 // <generalisation>
	relation 140418 ---|>
	  a public
	    cpp default "${type}"
	    classrelation_ref 140418 // <generalisation>
	  b parent class_ref 130050 // Sensor
      end

      classrelation 140546 // EvaluatedType (<directional composition>)
	relation 140546 *-->
	  a role_name "EvaluatedType" class_relation private
	    cpp default "    ${comment}${static}${mutable}${volatile}${const}${type} ${name}${value};
"
	    classrelation_ref 140546 // EvaluatedType (<directional composition>)
	  b parent class_ref 140290 // EVALUATED_TYPE
      end

      attribute 191746 "IsSPSN"
	class_attribute private explicit_type "bool"
	cpp_decl "    ${comment}${static}${mutable}${volatile}${const}${type} ${name}${value};
"
	java_decl ""
	php_decl ""
	python_decl ""
	idl_decl ""
      end

      attribute 191874 "MinNumbers"
	class_attribute private explicit_type "int"
	cpp_decl "    ${comment}${static}${mutable}${volatile}${const}${type} ${name}${value};
"
	java_decl ""
	php_decl ""
	python_decl ""
	idl_decl ""
      end

      attribute 192002 "SensorName"
	class_attribute private explicit_type "std::string"
	cpp_decl "    ${comment}${static}${mutable}${volatile}${const}${type} ${name}${value};
"
	java_decl ""
	php_decl ""
	python_decl ""
	idl_decl ""
      end

      attribute 192130 "Todo"
	class_attribute private explicit_type "std::string"
	cpp_decl "    ${comment}${static}${mutable}${volatile}${const}${type} ${name}${value};
"
	java_decl ""
	php_decl ""
	python_decl ""
	idl_decl ""
      end

      attribute 192258 "SensorInstance"
	class_attribute private explicit_type "int"
	cpp_decl "    ${comment}${static}${mutable}${volatile}${const}${type} ${name}${value};
"
	java_decl ""
	php_decl ""
	python_decl ""
	idl_decl ""
      end

      attribute 192386 "IsInitialized"
	class_attribute private explicit_type "bool"
	cpp_decl "    ${comment}${static}${mutable}${volatile}${const}${type} ${name}${value};
"
	java_decl ""
	php_decl ""
	python_decl ""
	idl_decl ""
      end

      attribute 192514 "NbToDoSequence"
	class_attribute private explicit_type "int"
	cpp_decl "    ${comment}${static}${mutable}${volatile}${const}${type} ${name}${value};
"
	java_decl ""
	php_decl ""
	python_decl ""
	idl_decl ""
      end

      attribute 192642 "NbDoneSequence"
	class_attribute private explicit_type "int"
	cpp_decl "    ${comment}${static}${mutable}${volatile}${const}${type} ${name}${value};
"
	java_decl ""
	php_decl ""
	python_decl ""
	idl_decl ""
      end

      attribute 192770 "Thresholds"
	class_attribute private explicit_type "double"
	stereotype "std::vector"
	cpp_decl "    ${comment}${static}${mutable}${volatile}${const}${stereotype}<${type}> ${name}${value};
"
	java_decl ""
	php_decl ""
	python_decl ""
	idl_decl ""
	comment " list of found scores "
      end

      attribute 192898 "Scores"
	class_attribute private explicit_type "std::vector <std::vector <double> > "
	stereotype "std::vector"
	cpp_decl "    ${comment}${static}${mutable}${volatile}${const}${stereotype}<${type}> ${name}${value};
"
	java_decl ""
	php_decl ""
	python_decl ""
	idl_decl ""
	comment " Score[k][i][j] is "
      end

      attribute 193026 "IsAnnotateds"
	class_attribute private explicit_type "std::vector <std::vector <bool> > "
	stereotype "std::vector"
	cpp_decl "    ${comment}${static}${mutable}${volatile}${const}${stereotype}<${type}> ${name}${value};
"
	java_decl ""
	php_decl ""
	python_decl ""
	idl_decl ""
      end

      attribute 193154 "IsAPositions"
	class_attribute private explicit_type "std::vector <std::vector <bool> > "
	stereotype "std::vector"
	cpp_decl "    ${comment}${static}${mutable}${volatile}${const}${stereotype}<${type}> ${name}${value};
"
	java_decl ""
	php_decl ""
	python_decl ""
	idl_decl ""
      end

      attribute 193282 "Nb"
	class_attribute private explicit_type "std::vector <int> "
	stereotype "std::vector"
	cpp_decl "    ${comment}${static}${mutable}${volatile}${const}${stereotype}<${type}> ${name}${value};
"
	java_decl ""
	php_decl ""
	python_decl ""
	idl_decl ""
	comment " number of detections"
      end

      classrelation 140674 // sensor (<unidirectional association>)
	relation 140674 --->
	  a role_name "sensor" private
	    cpp default "    ${comment}${static}${mutable}${volatile}${const}${type} * ${name}${value};
"
	    classrelation_ref 140674 // sensor (<unidirectional association>)
	  b parent class_ref 130050 // Sensor
      end

      classrelation 140802 // gene (<unidirectional association>)
	relation 140802 --->
	  a role_name "gene" private
	    cpp default "    ${comment}${static}${mutable}${volatile}${const}${type} * ${name}${value};
"
	    classrelation_ref 140802 // gene (<unidirectional association>)
	  b parent class_ref 128386 // Prediction
      end

      attribute 193410 "seqName"
	private explicit_type "char"
	multiplicity "[FILENAME_MAX+1]"
	cpp_decl "    ${comment}${static}${mutable}${volatile}${const}${type} ${name}${multiplicity}${value};
"
	java_decl ""
	php_decl ""
	python_decl ""
	idl_decl ""
      end

      attribute 193538 "fp"
	class_attribute private explicit_type "FILE"
	cpp_decl "    ${comment}${static}${mutable}${volatile}${const}${type} * ${name}${value};
"
	java_decl ""
	php_decl ""
	python_decl ""
	idl_decl ""
      end

      class 140546 "SIGNAL_STRAND_NO"
	visibility package stereotype "enum"
	cpp_decl "${comment}enum ${name} {
${items}
};
"
	java_decl ""
	php_decl ""
	python_2_2 python_decl ""
	idl_decl ""
	explicit_switch_type ""
	
	attribute 193666 "START_F"
	  public type class_ref 140546 // SIGNAL_STRAND_NO
	  init_value "=0"
	  cpp_decl "  ${name}${value},${comment}"
	  java_decl ""
	  php_decl ""
	  python_decl ""
	  idl_decl ""
	end

	attribute 193794 "START_R"
	  public type class_ref 140546 // SIGNAL_STRAND_NO
	  init_value "=1"
	  cpp_decl "  ${name}${value},${comment}"
	  java_decl ""
	  php_decl ""
	  python_decl ""
	  idl_decl ""
	end

	attribute 193922 "STOP_F"
	  public type class_ref 140546 // SIGNAL_STRAND_NO
	  init_value "=0"
	  cpp_decl "  ${name}${value},${comment}"
	  java_decl ""
	  php_decl ""
	  python_decl ""
	  idl_decl ""
	end

	attribute 194050 "STOP_R"
	  public type class_ref 140546 // SIGNAL_STRAND_NO
	  init_value "=1"
	  cpp_decl "  ${name}${value},${comment}"
	  java_decl ""
	  php_decl ""
	  python_decl ""
	  idl_decl ""
	end

	attribute 194178 "ACC_F"
	  public type class_ref 140546 // SIGNAL_STRAND_NO
	  init_value "=0"
	  cpp_decl "  ${name}${value},${comment}"
	  java_decl ""
	  php_decl ""
	  python_decl ""
	  idl_decl ""
	end

	attribute 194306 "ACC_R"
	  public type class_ref 140546 // SIGNAL_STRAND_NO
	  init_value "=1"
	  cpp_decl "  ${name}${value},${comment}"
	  java_decl ""
	  php_decl ""
	  python_decl ""
	  idl_decl ""
	end

	attribute 194434 "DON_F"
	  public type class_ref 140546 // SIGNAL_STRAND_NO
	  init_value "=2"
	  cpp_decl "  ${name}${value},${comment}"
	  java_decl ""
	  php_decl ""
	  python_decl ""
	  idl_decl ""
	end

	attribute 194562 "DON_R"
	  public type class_ref 140546 // SIGNAL_STRAND_NO
	  init_value "=3"
	  cpp_decl "  ${name}${value},${comment}"
	  java_decl ""
	  php_decl ""
	  python_decl ""
	  idl_decl ""
	end
      end

      attribute 194690 "SensorType"
	private explicit_type "byte"
	cpp_decl "    ${comment}${static}${mutable}${volatile}${const}${type} ${name}${value};
"
	java_decl ""
	php_decl ""
	python_decl ""
	idl_decl ""
      end

      operation 219394 "ReadGFFAnnotation"
	private explicit_return_type "void"
	nparams 2
	  param in name "name" explicit_type "char"
	  param inout name "x" type class_ref 128514 // DNASeq
	cpp_decl "    ${comment}${friend}${static}${inline}${virtual}${type} ${name}${(}${t0} ${p0}[FILENAME_MAX+1]${v0}, ${t1} * ${p1}${v1}${)}${const}${volatile}${throw}${abstract};
"
	cpp_def "${comment}${inline}${type} ${class}::${name}${(}${t0} ${p0}[FILENAME_MAX+1], ${t1} * ${p1}${)}${const}${volatile}${throw}${staticnl}{
  ${body}}
"
	
	
	
	
      end

      operation 219522 "ReadGFF3Annotation"
	private explicit_return_type "void"
	nparams 2
	  param inout name "geneFeatureSet" type class_ref 130562 // GeneFeatureSet
	  param inout name "X" type class_ref 128514 // DNASeq
	cpp_decl "    ${comment}${friend}${static}${inline}${virtual}${type} ${name}${(}${t0} & ${p0}${v0}, ${t1} * ${p1}${v1}${)}${const}${volatile}${throw}${abstract};
"
	cpp_def "${comment}${inline}${type} ${class}::${name}${(}${t0} & ${p0}, ${t1} * ${p1}${)}${const}${volatile}${throw}${staticnl}{
  ${body}}
"
	
	
	
	
      end

      operation 219650 "ReadAnnotation"
	private explicit_return_type "void"
	nparams 1
	  param inout name "" type class_ref 128514 // DNASeq
	cpp_decl "    ${comment}${friend}${static}${inline}${virtual}${type} ${name}${(}${t0} * ${p0}${v0}${)}${const}${volatile}${throw}${abstract};
"
	cpp_def "${comment}${inline}${type} ${class}::${name}${(}${t0} * ${p0}${)}${const}${volatile}${throw}${staticnl}{
  ${body}}
"
	
	
	
	
      end

      operation 219778 "SigType_TF"
	private explicit_return_type "char"
	nparams 3
	  param in name "" explicit_type "int"
	  param in name "" explicit_type "int"
	  param in name "" explicit_type "char"
	cpp_decl "    ${comment}${friend}${static}${inline}${virtual}const ${type} * ${name}${(}${t0} ${p0}${v0}, ${t1} ${p1}${v1}, const ${t2} * * ${p2}${v2}${)}${const}${volatile}${throw}${abstract};
"
	cpp_def "${comment}${inline}const ${type} * ${class}::${name}${(}${t0} ${p0}, ${t1} ${p1}, const ${t2} * * ${p2}${)}${const}${throw}${staticnl}{
  ${body}}
"
	
	
	
	
      end

      operation 219906 "State"
	private explicit_return_type "char"
	nparams 1
	  param in name "" explicit_type "int"
	cpp_decl "    ${comment}${friend}${static}${inline}${virtual}const ${type} * ${name}${(}${t0} ${p0}${v0}${)}${const}${volatile}${throw}${abstract};
"
	cpp_def "${comment}${inline}const ${type} * ${class}::${name}${(}${t0} ${p0}${)}${const}${volatile}${throw}${staticnl}{
  ${body}}
"
	
	
	
	
      end

      operation 220034 "AnalyzeSPSN"
	private explicit_return_type "void"
	nparams 1
	  param in name "" explicit_type "void"
	cpp_decl "    ${comment}${friend}${static}${inline}${virtual}${type} ${name}${(}${t0} ${p0}${v0}${)}${const}${volatile}${throw}${abstract};
"
	cpp_def "${comment}${inline}${type} ${class}::${name}${(}${t0} ${p0}${)}${const}${volatile}${throw}${staticnl}{
  ${body}}
"
	
	
	
	
      end

      operation 220162 "UpdateTP_FP_TN_FN"
	private explicit_return_type "void"
	nparams 4
	  param in name "no_threshold" explicit_type "int"
	  param in name "is_don" explicit_type "bool"
	  param in name "is_annotated" explicit_type "bool"
	  param in name "is_detected" explicit_type "bool"
	cpp_decl "    ${comment}${friend}${static}${inline}${virtual}${type} ${name}${(}${t0} ${p0}${v0}, ${t1} ${p1}${v1}, ${t2} ${p2}${v2}, ${t3} ${p3}${v3}${)}${const}${volatile}${throw}${abstract};
"
	cpp_def "${comment}${inline}${type} ${class}::${name}${(}${t0} ${p0}, ${t1} ${p1}, ${t2} ${p2}, ${t3} ${p3}${)}${const}${throw}${staticnl}{
  ${body}}
"
	
	
	
	
      end

      operation 220290 "UpdateThreshold"
	private explicit_return_type "void"
	nparams 1
	  param in name "t" explicit_type "double"
	cpp_decl "    ${comment}${friend}${static}${inline}${virtual}${type} ${name}${(}${t0} ${p0}${v0}${)}${const}${volatile}${throw}${abstract};
"
	cpp_def "${comment}${inline}${type} ${class}::${name}${(}${t0} ${p0}${)}${const}${volatile}${throw}${staticnl}{
  ${body}}
"
	
	
	
	
      end

      operation 220418 "print"
	private explicit_return_type "void"
	nparams 1
	  param in name "" explicit_type "void"
	cpp_decl "    ${comment}${friend}${static}${inline}${virtual}${type} ${name}${(}${t0} ${p0}${v0}${)}${const}${volatile}${throw}${abstract};
"
	cpp_def "${comment}${inline}${type} ${class}::${name}${(}${t0} ${p0}${)}${const}${volatile}${throw}${staticnl}{
  ${body}}
"
	
	
	
	
      end

      operation 220546 "SensorTester"
	public explicit_return_type ""
	nparams 2
	  param in name "n" explicit_type "int"
	  param inout name "X" type class_ref 128514 // DNASeq
	cpp_decl "    ${comment}${inline}${name}${(}${t0} ${p0}${v0}, ${t1} * ${p1}${v1}${)}${volatile}${throw};
"
	cpp_def "${comment}${inline}${class}::${name}${(}${t0} ${p0}, ${t1} * ${p1}${)}${throw}{
${body}}
"
	
	
	
	
      end

      operation 220674 "~SensorTester"
	cpp_virtual public explicit_return_type ""
	nparams 1
	  param in name "" explicit_type "void"
	cpp_decl "    ${comment}${inline}${virtual}${name}${(}${t0} ${p0}${v0}${)}${volatile}${throw};
"
	cpp_def "${comment}${inline}${class}::${name}${(}${t0} ${p0}${)}${throw}{
${body}}
"
	
	
	
	
      end

      operation 220802 "Init"
	cpp_virtual public explicit_return_type "void"
	nparams 1
	  param inout name "" type class_ref 128514 // DNASeq
	cpp_decl "    ${comment}${friend}${static}${inline}${virtual}${type} ${name}${(}${t0} * ${p0}${v0}${)}${const}${volatile}${throw}${abstract};
"
	cpp_def "${comment}${inline}${type} ${class}::${name}${(}${t0} * ${p0}${)}${const}${volatile}${throw}${staticnl}{
  ${body}}
"
	
	
	
	
      end

      operation 220930 "GiveInfo"
	cpp_virtual public explicit_return_type "void"
	nparams 3
	  param inout name "" type class_ref 128514 // DNASeq
	  param in name "" explicit_type "int"
	  param inout name "" type class_ref 128258 // DATA
	cpp_decl "    ${comment}${friend}${static}${inline}${virtual}${type} ${name}${(}${t0} * ${p0}${v0}, ${t1} ${p1}${v1}, ${t2} * ${p2}${v2}${)}${const}${volatile}${throw}${abstract};
"
	cpp_def "${comment}${inline}${type} ${class}::${name}${(}${t0} * ${p0}, ${t1} ${p1}, ${t2} * ${p2}${)}${const}${throw}${staticnl}{
  ${body}}
"
	
	
	
	
      end

      operation 221058 "Plot"
	cpp_virtual public explicit_return_type "void"
	nparams 1
	  param inout name "" type class_ref 128514 // DNASeq
	cpp_decl "    ${comment}${friend}${static}${inline}${virtual}${type} ${name}${(}${t0} * ${p0}${v0}${)}${const}${volatile}${throw}${abstract};
"
	cpp_def "${comment}${inline}${type} ${class}::${name}${(}${t0} * ${p0}${)}${const}${volatile}${throw}${staticnl}{
  ${body}}
"
	
	
	
	
      end

      operation 221186 "PostAnalyse"
	cpp_virtual public explicit_return_type "void"
	nparams 2
	  param inout name "" type class_ref 128386 // Prediction
	  param inout name "" explicit_type "FILE"
	cpp_decl "    ${comment}${friend}${static}${inline}${virtual}${type} ${name}${(}${t0} * ${p0}${v0}, ${t1} * ${p1}${v1}${)}${const}${volatile}${throw}${abstract};
"
	cpp_def "${comment}${inline}${type} ${class}::${name}${(}${t0} * ${p0}, ${t1} * ${p1}${)}${const}${volatile}${throw}${staticnl}{
  ${body}}
"
	
	
	
	
      end
    end
  end

  deploymentview 131714 "Tester"
    //deployment diagram settings
    package_name_in_tab default show_context default write_horizontally default auto_label_position default draw_all_relations default shadow default
    draw_component_as_icon default show_component_req_prov default show_component_rea default show_stereotype_properties default
    artifact 136066 "Sensor.Tester"
      stereotype "source"
      cpp_h "#ifndef ${NAMESPACE}_${NAME}_H
#define ${NAMESPACE}_${NAME}_H

${comment}
${includes}
${declarations}
${namespace_start}
${definition}
${namespace_end}
#endif
"
      cpp_src "${comment}
${includes}
${namespace_start}
${members}
${namespace_end}"
      associated_classes
	class_ref 140290 // EVALUATED_TYPE
	class_ref 140418 // SensorTester
      end
    end
  end
end
